Storing Data

To store and query data, the current best API is through the ScalablilityBenchmark class. Sample storage data and query file can be downloaded here and here. Examples for storing and querying Mendel are found below.

java -cp lib/biojava-core-4.1.0.jar:lib/Mendel-0.1.jar:lib/slf4j-api-1.7.9.jar:lib/biojava-alignment-
4.1.0.jar mendel.test.ScalabilityBenchmark cashew 5555 store.fa - 1

java -cp lib/biojava-core-4.1.0.jar:lib/Mendel-0.1.jar:lib/slf4j-api-1.7.9.jar:lib/biojava-alignment-
4.1.0.jar mendel.test.ScalabilityBenchmark cashew 5555 - data/queryFile 1