public class SmithWaterman extends java.lang.Object implements java.lang.Comparable<SmithWaterman>
Constructor and Description |
---|
SmithWaterman(java.lang.String queryID,
java.lang.String query,
java.lang.String subjectID,
java.lang.String subject) |
Modifier and Type | Method and Description |
---|---|
int |
compareTo(SmithWaterman o) |
org.biojava.nbio.alignment.template.SequencePair<org.biojava.nbio.core.sequence.ProteinSequence,org.biojava.nbio.core.sequence.compound.AminoAcidCompound> |
getAlignment() |
double |
getScore() |
java.lang.String |
getSubjectID() |
java.lang.String |
toString() |
public SmithWaterman(java.lang.String queryID, java.lang.String query, java.lang.String subjectID, java.lang.String subject) throws org.biojava.nbio.core.exceptions.CompoundNotFoundException
org.biojava.nbio.core.exceptions.CompoundNotFoundException
public double getScore()
public java.lang.String getSubjectID()
public org.biojava.nbio.alignment.template.SequencePair<org.biojava.nbio.core.sequence.ProteinSequence,org.biojava.nbio.core.sequence.compound.AminoAcidCompound> getAlignment()
public java.lang.String toString()
toString
in class java.lang.Object
public int compareTo(SmithWaterman o)
compareTo
in interface java.lang.Comparable<SmithWaterman>